PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00002.1.g16400.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 168aa    MW: 19241.3 Da    PI: 10.1896
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00002.1.g16400.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.32.3e-29959151
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    krien + rqv+fskRrng+lKKA+ELSvLCdaeva+++fs++gklye++s
  Zjn_sc00002.1.g16400.1.sm.mkhc  9 KRIENPTSRQVSFSKRRNGLLKKAFELSVLCDAEVALVVFSTRGKLYEFAS 59
                                    79***********************************************86 PP

2K-box60.47.3e-21591243499
                           K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                                     + R+llGe Le++s++eL++Le +Leksl+ +R +K++ll eq+++l++ke  l+++n++Lr+k +
  Zjn_sc00002.1.g16400.1.sm.mkhc  59 SARKLLGERLEECSIEELHSLEVKLEKSLRIVRGRKTQLLEEQVRKLKEKEMTLRKNNEDLREKCK 124
                                     57*************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.104161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.12E-27361IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-30323IPR002100Transcription factor, MADS-box
CDDcd002653.40E-34359No hitNo description
PfamPF003197.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.95139129IPR002487Transcription factor, K-box
PfamPF014868.2E-2059124IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MVRGKTQLKR IENPTSRQVS FSKRRNGLLK KAFELSVLCD AEVALVVFST RGKLYEFASA  60
RKLLGERLEE CSIEELHSLE VKLEKSLRIV RGRKTQLLEE QVRKLKEKEM TLRKNNEDLR  120
EKCKDQPLLV APAAVDYMDV ETELYIGLPG RDNRPNKAAI AVSQSNRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A4e-17360259MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B4e-17360259MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C4e-17360259MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_D4e-17360259MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3kov_A5e-17360259Myocyte-specific enhancer factor 2A
3kov_B5e-17360259Myocyte-specific enhancer factor 2A
3kov_I5e-17360259Myocyte-specific enhancer factor 2A
3kov_J5e-17360259Myocyte-specific enhancer factor 2A
3mu6_A4e-17360259Myocyte-specific enhancer factor 2A
3mu6_B4e-17360259Myocyte-specific enhancer factor 2A
3mu6_C4e-17360259Myocyte-specific enhancer factor 2A
3mu6_D4e-17360259Myocyte-specific enhancer factor 2A
3p57_A5e-17360259Myocyte-specific enhancer factor 2A
3p57_B5e-17360259Myocyte-specific enhancer factor 2A
3p57_C5e-17360259Myocyte-specific enhancer factor 2A
3p57_D5e-17360259Myocyte-specific enhancer factor 2A
3p57_I5e-17360259Myocyte-specific enhancer factor 2A
3p57_J5e-17360259Myocyte-specific enhancer factor 2A
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0033285e-68AB003328.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:S11905.
GenBankAC0986955e-68AC098695.2 Oryza sativa Japonica Group chromosome 3 clone OJ1126B12, complete sequence.
GenBankAC2104755e-68AC210475.1 Oryza glaberrima clone OG_BBa0054O06, complete sequence.
GenBankAK0676415e-68AK067641.1 Oryza sativa Japonica Group cDNA clone:J013108C22, full insert sequence.
GenBankAK1049215e-68AK104921.1 Oryza sativa Japonica Group cDNA clone:001-047-H02, full insert sequence.
GenBankAP0149595e-68AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY3324765e-68AY332476.1 Oryza sativa (japonica cultivar-group) MADS box protein (AGL20) mRNA, complete cds.
GenBankAY5519155e-68AY551915.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS210 mRNA, complete cds.
GenBankCT8291385e-68CT829138.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN046P14, full insert sequence.
GenBankCT8300375e-68CT830037.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA030D10, full insert sequence.
GenBankCU4063795e-68CU406379.1 Oryza rufipogon (W1943) cDNA clone: ORW1943S104H08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985919.14e-81PREDICTED: MADS-box transcription factor 50 isoform X2
RefseqXP_004985920.14e-81PREDICTED: MADS-box transcription factor 50 isoform X2
RefseqXP_012698462.14e-81PREDICTED: MADS-box transcription factor 50 isoform X2
SwissprotQ9XJ602e-77MAD50_ORYSJ; MADS-box transcription factor 50
TrEMBLQ9FR858e-79Q9FR85_MAIZE; M5 protein
STRINGGRMZM2G171365_P012e-78(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14133379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.19e-49AGAMOUS-like 19